{"id":17593,"date":"2020-09-15T18:58:25","date_gmt":"2020-09-15T16:58:25","guid":{"rendered":"https:\/\/ellipse.prbb.org\/?p=17593"},"modified":"2020-09-15T19:40:12","modified_gmt":"2020-09-15T17:40:12","slug":"un-far-a-locea-de-dades-del-sars-cov-2","status":"publish","type":"post","link":"https:\/\/ellipse.prbb.org\/ca\/un-far-a-locea-de-dades-del-sars-cov-2\/","title":{"rendered":"Un far al mar de dades del SARS-CoV-2"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\">L\u2019an\u00e0lisi de dades mai no ha estat tan rellevant, com la <a rel=\"noreferrer noopener\" href=\"https:\/\/ellipse.prbb.org\/ca\/la-vida-cientifica-en-plena-pandemia-per-coronavirus\/\" target=\"_blank\">crisi mundial de salut causada pel coronavirus SARS-CoV-2<\/a> ha fet evident, per\u00f2 les dades gen\u00f2miques s\u00f3n incre\u00efblement dif\u00edcils de navegar. Ara, un equip de bioinform\u00e0tics del <a rel=\"noreferrer noopener\" href=\"https:\/\/www.crg.eu\/\" target=\"_blank\">Centre de Regulaci\u00f3 Gen\u00f2mica (CRG)<\/a>, que forma part d\u2019<a rel=\"noreferrer noopener\" href=\"https:\/\/elixir-europe.org\/\" target=\"_blank\">ELIXIR<\/a> Espanya, han desenvolupat una plataforma que <strong>permet navegar el mar de dades de SARS-CoV-2<\/strong>: el <a rel=\"noreferrer noopener\" href=\"https:\/\/covid19beacon.crg.eu\/\" target=\"_blank\"><strong>COVID-19 Viral Beacon<\/strong><\/a>.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">La plataforma presenta l&#8217;oportunitat d&#8217;<strong>analitzar dades gen\u00e8tiques en brut i consensuades de COVID-19<\/strong> de diversos conjunts de dades, cercant variants gen\u00e8tiques espec\u00edfiques i explorant les metadades associades, a partir d&#8217;una <strong>interf\u00edcie intuitiva per a l&#8217;usuari<\/strong>. Per exemple, pot filtrar soques virals d&#8217;una regi\u00f3 geogr\u00e0fica concreta o descobrir variants que puguin explicar difer\u00e8ncies individuals en la resposta immune.<\/p>\n\n\n\n<div style=\"height:45px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\"><p>\u00abLa plataforma \u00e9s f\u00e0cilment accessible per cercar informaci\u00f3 gen\u00f2mica del SARS-CoV-2 r\u00e0pidament, fins i tot mitjan\u00e7ant tel\u00e8fons m\u00f2bils\u00bb<br><strong>Jordi Rambla<\/strong>, cap d\u2019equip d\u2019EGA al CRG<\/p><\/blockquote>\n\n\n\n<div style=\"height:45px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">El Viral Beacon del CRG utilitza l&#8217;API <a rel=\"noreferrer noopener\" href=\"https:\/\/www.ga4gh.org\/\" target=\"_blank\">GA4GH <\/a>Beacon, que es va crear inicialment per descobrir els <a rel=\"noreferrer noopener\" href=\"https:\/\/ellipse.prbb.org\/ca\/snps-variacions-dun-tema\/\" target=\"_blank\">Polimorfismes de Nucle\u00f2tids \u00danics (SNP)<\/a> humans i <strong>compartir dades gen\u00f2miques en investigacions biom\u00e8diques sense comprometre la privacitat<\/strong>.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Fa uns mesos, l&#8217;equip cient\u00edfic del CRG va modificar i <strong>ampliar l&#8217;arquitectura i la funcionalitat d&#8217;aquesta eina pel descobriment de dades del SARS-CoV-2<\/strong>. El node ELIXIR Spain va comen\u00e7ar a recopilar seq\u00fc\u00e8ncies gen\u00f2miques p\u00fabliques a trav\u00e9s de <em><a rel=\"noreferrer noopener\" href=\"https:\/\/covid19beacon-test.crg.eu\/pipelines\" target=\"_blank\">pipelines <\/a><\/em>dedicades (llegiu l&#8217;article de <a rel=\"noreferrer noopener\" href=\"https:\/\/galaxyproject.org\/news\/2020-02-covid19-paper\/\" target=\"_blank\">Galaxy <\/a>per m\u00e9s detalls).<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Babita Singh<\/strong>, que forma part de l\u2019<a rel=\"noreferrer noopener\" href=\"https:\/\/ellipse.prbb.org\/ca\/lega-repositori-distribuidor-i-accelerador-de-la-ciencia\/\" target=\"_blank\">equip EGA<\/a> del CRG, va dir: \u00abAra busquem col\u00b7laboracions addicionals amb experts en la mat\u00e8ria per ajudar-nos a ampliar les funcionalitats d\u2019aquesta eina. L&#8217;objectiu \u00e9s fer de Beacon una eina r\u00e0pida de cerca de variants gen\u00f2miques per a COVID i altres malalties infeccioses. En el futur, la nostra idea \u00e9s tamb\u00e9 incloure informaci\u00f3 de variants gen\u00f2miques humanes per <strong>estudiar la interacci\u00f3 entre la gen\u00f2mica humana i la viral<\/strong>\u00ab.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Bioinform\u00e0tics del CRG han desenvolupat una plataforma per a analitzar i explorar dades gen\u00e8tiques del SARS-CoV-2 provinents de diverses fonts.<\/p>\n","protected":false},"author":9,"featured_media":17589,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[26],"tags":[261,721,265,706],"new-type":[35],"class_list":["post-17593","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-recerca","tag-bioinformatica","tag-coronavirus-ca","tag-crg-ca","tag-genomica","new-type-noticies"],"acf":[],"_links":{"self":[{"href":"https:\/\/ellipse.prbb.org\/ca\/wp-json\/wp\/v2\/posts\/17593","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ellipse.prbb.org\/ca\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/ellipse.prbb.org\/ca\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/ellipse.prbb.org\/ca\/wp-json\/wp\/v2\/users\/9"}],"replies":[{"embeddable":true,"href":"https:\/\/ellipse.prbb.org\/ca\/wp-json\/wp\/v2\/comments?post=17593"}],"version-history":[{"count":12,"href":"https:\/\/ellipse.prbb.org\/ca\/wp-json\/wp\/v2\/posts\/17593\/revisions"}],"predecessor-version":[{"id":17608,"href":"https:\/\/ellipse.prbb.org\/ca\/wp-json\/wp\/v2\/posts\/17593\/revisions\/17608"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/ellipse.prbb.org\/ca\/wp-json\/wp\/v2\/media\/17589"}],"wp:attachment":[{"href":"https:\/\/ellipse.prbb.org\/ca\/wp-json\/wp\/v2\/media?parent=17593"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/ellipse.prbb.org\/ca\/wp-json\/wp\/v2\/categories?post=17593"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/ellipse.prbb.org\/ca\/wp-json\/wp\/v2\/tags?post=17593"},{"taxonomy":"new-type","embeddable":true,"href":"https:\/\/ellipse.prbb.org\/ca\/wp-json\/wp\/v2\/new-type?post=17593"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}